PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.197410.1
Common NameCsa_1G008430
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 294aa    MW: 33380.8 Da    PI: 9.8249
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.197410.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     r+ WT+eEd +++ +v ++G+ +W++ +++ g++R++k+c++rw +yl
   Cucsa.197410.1 14 RDLWTAEEDAKILAYVSKHGTSNWTSAPKKAGLRRCGKSCRLRWTNYL 61
                     567*******************************************97 PP

2Myb_DNA-binding46.39.8e-1568110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++T +E+el++++++  G++ W+ Ia+ ++ gRt++++k++w++
   Cucsa.197410.1  68 QNFTSQEEELIIRLHAAIGSR-WAIIAQQLP-GRTDNDVKNYWNT 110
                      79*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.498961IPR017930Myb domain
SuperFamilySSF466899.36E-2911108IPR009057Homeodomain-like
SMARTSM007172.6E-111363IPR001005SANT/Myb domain
PfamPF002491.1E-131561IPR001005SANT/Myb domain
CDDcd001671.77E-91761No hitNo description
Gene3DG3DSA:1.10.10.602.6E-221768IPR009057Homeodomain-like
PROSITE profilePS5129423.06462116IPR017930Myb domain
SMARTSM007171.5E-1366114IPR001005SANT/Myb domain
PfamPF002492.2E-1368110IPR001005SANT/Myb domain
CDDcd001672.00E-969112No hitNo description
Gene3DG3DSA:1.10.10.606.4E-2469116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MVRIPSCDKL NLKRDLWTAE EDAKILAYVS KHGTSNWTSA PKKAGLRRCG KSCRLRWTNY  60
LRPDLKHQNF TSQEEELIIR LHAAIGSRWA IIAQQLPGRT DNDVKNYWNT KLRRKLSEMG  120
IDPVTHKPFS QILADYGNIG GLPRSTKRIG SLSREMKTSA NMKPEHHSNS AQGLVDLLTP  180
SMLLPETVPV MDKSMNDNVH QLNNNHPLNL LAQLQAMQRV TEASHCTFNE QIQPHFYTQS  240
YLPSSSSSSS STTTVTCRNT SSTFSWQDFL LEDAFLPSEP REHENKTRYQ KKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27111174109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453162.10.0PREDICTED: transcription factor MYB24-like
TrEMBLA0A0A0LP090.0A0A0A0LP09_CUCSA; Uncharacterized protein
STRINGPOPTR_0015s07900.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29423474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.17e-70MYB family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]